PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19703_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 119aa    MW: 13811.2 Da    PI: 10.6415
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19703_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.11e-1514971393
                                TT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                          B3 13 sgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.sef 90
                                ++rl++p k ++ +    g+    +t + +desgr We+++ y++k+++    vlt+GW+eFv  ++L  gD v F  +g+ +++
  Cotton_A_19703_BGI-A2_v1.0 14 EKRLTIPSKSLRCFpslAGN--HVVTFKARDESGRPWEFQI-YTRKGKKymkPVLTRGWREFVCTKELTIGDKVEFD-KGEkEQG 94
                                3579*******666977444..56799**************.544444436689**********************9.4444666 PP

                                ..E CS
                          B3 91 elv 93
                                e v
  Cotton_A_19703_BGI-A2_v1.0 95 EAV 97
                                554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.532104IPR003340B3 DNA binding domain
CDDcd100172.94E-12386No hitNo description
Gene3DG3DSA:2.40.330.107.2E-18394IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.3E-44107IPR003340B3 DNA binding domain
SuperFamilySSF1019367.59E-12488IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-121497IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MAIVSKQLKK TDIEKRLTIP SKSLRCFPSL AGNHVVTFKA RDESGRPWEF QIYTRKGKKY  60
MKPVLTRGWR EFVCTKELTI GDKVEFDKGE KEQGEAVMYR VRVVRAVKIF GFVLDHKSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480603.11e-62PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLA0A0D2RLS92e-62A0A0D2RLS9_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16920512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.22e-07B3 family protein